
##Minimum number of links (read pairs) to compute scaffold (default -k $min_links_default, optional
min_links 5

##Maximum link ratio between two best contig pairs *higher values lead to least accurate scaffolding*
max_link_ratio 0.70

##Minimum overlap required between contigs to merge adjacent contigs in a scaffold
min_contig_overlap 15

max_count_trim 10

##Runs in verbose mode ( 1=yes, 0=no )
verbose 1

##Make .dot file for visualisation
doplot 1
